Stem-loop str-mir-7880s

Accession

MI0027128

Description

Strongyloides ratti str-mir-7880s precursor miRNA

Sequence

UGGCUGGAAAGGCUGCAAAUUaagcuguugauucuaaaUUUGCGACCUAUAUCCAGGCCACG
((((((((.(((.((((((((.((.........)).)))))))).)))...)))).))))..

Structure

--    -    --A   C        a  cug 
  UGGC UGGA   AGG UGCAAAUU ag   u
  |||| ||||   ||| |||||||| ||   u
  ACCG ACCU   UCC GCGUUUaa uc   g
GC    G    AUA   A        a  uua 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 395685-395746 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880s

Mature str-miR-7880s-5p

• Accession: MIMAT0033388
• Description: Strongyloides ratti str-miR-7880s-5p mature miRNA
• Sequence: 1 - UGGCUGGAAAGGCUGCAAAUU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880s-3p

• Accession: MIMAT0033389
• Description: Strongyloides ratti str-miR-7880s-3p mature miRNA
• Sequence: 39 - UUUGCGACCUAUAUCCAGGCCACG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260