Stem-loop str-mir-7880q

Accession

MI0027123

Description

Strongyloides ratti str-mir-7880q precursor miRNA

Sequence

GGCUGGUUAGGCUGCAAAUCuggcuuuagaucauaUUUGCGACCAAAAUCAUGCCAC
((((((((.((.(((((((.(((.......))).))))))).))..))))).)))..

Structure

--   -     -A  C       C   cu 
  GGC UGGUU  GG UGCAAAU ugg  u
  ||| |||||  || ||||||| |||  u
  CCG ACUAA  CC GCGUUUa acu  a
CA   U     AA  A       u   ag 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 396231-396287 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880q

Mature str-miR-7880q-5p

• Accession: MIMAT0033378
• Description: Strongyloides ratti str-miR-7880q-5p mature miRNA
• Sequence: 1 - GGCUGGUUAGGCUGCAAAUC - 20
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880q-3p

• Accession: MIMAT0033379
• Description: Strongyloides ratti str-miR-7880q-3p mature miRNA
• Sequence: 36 - UUUGCGACCAAAAUCAUGCCAC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260