Stem-loop str-mir-1175

Accession

MI0027122

Description

Strongyloides ratti str-mir-1175 precursor miRNA

Sequence

CGGUGAAGAAGAGAAUCUGACUuagaauaugaaucaagUGAGAUUCUCUUUUCUUCAUUC
.(((((((((((((((((.((((.((.......)))))).)))))))))..)))))))).

Structure

C        --         G    a  au 
 GGUGAAGA  AGAGAAUCU ACUu ga  a
 ||||||||  ||||||||| |||| ||  u
 UUACUUCU  UCUCUUAGA Ugaa cu  g
C        UU         G    -  aa 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr00: 1299301-1299360 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-1175

Mature str-miR-1175-5p

• Accession: MIMAT0033376
• Description: Strongyloides ratti str-miR-1175-5p mature miRNA
• Sequence: 1 - CGGUGAAGAAGAGAAUCUGACU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-1175-3p

• Accession: MIMAT0033377
• Description: Strongyloides ratti str-miR-1175-3p mature miRNA
• Sequence: 39 - UGAGAUUCUCUUUUCUUCAUUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260