Stem-loop str-mir-7880f

Accession

MI0027094

Description

Strongyloides ratti str-mir-7880f precursor miRNA

Sequence

GGCCUGGUUAGUCGCAAAGAauuuuucagugauucUUUGCGAUUGUUUCCAGGCCAGC
(((((((.(((((((((((((((.......)))))))))))))))...)))))))...

Structure

---       --U               uu 
   GGCCUGG   UAGUCGCAAAGAauu  u
   |||||||   |||||||||||||||  c
   CCGGACC   GUUAGCGUUUcuuag  a
CGA       UUU               ug 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_ChrX: 2080916-2080973 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880f

Mature str-miR-7880f-5p

• Accession: MIMAT0033321
• Description: Strongyloides ratti str-miR-7880f-5p mature miRNA
• Sequence: 1 - GGCCUGGUUAGUCGCAAAGA - 20
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880f-3p

• Accession: MIMAT0033322
• Description: Strongyloides ratti str-miR-7880f-3p mature miRNA
• Sequence: 36 - UUUGCGAUUGUUUCCAGGCCAGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260