Stem-loop str-mir-7880a

Accession

MI0027081

Description

Strongyloides ratti str-mir-7880a precursor miRNA

Sequence

CAGUUGGAUCGAUCAGCAAAAAacguuuaaaaauuuUUUGCGACUGUAUCCAAACUACG
.((((((((((.((.((((((((..........)))))))))).)).)))).))))...

Structure

--C    -    -  A  A        cguu 
   AGUU GGAU CG UC GCAAAAAa    u
   |||| |||| || || ||||||||     
   UCAA CCUA GU AG CGUUUuuu    a
GCA    A    U  C  -        aaaa 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_ChrX: 2081763-2081821 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880a

Mature str-miR-7880a-5p

• Accession: MIMAT0033298
• Description: Strongyloides ratti str-miR-7880a-5p mature miRNA
• Sequence: 1 - CAGUUGGAUCGAUCAGCAAAAA - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880a-3p

• Accession: MIMAT0033299
• Description: Strongyloides ratti str-miR-7880a-3p mature miRNA
• Sequence: 37 - UUUGCGACUGUAUCCAAACUACG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260