Stem-loop ppc-mir-8350

Accession

MI0027058

Description

Pristionchus pacificus ppc-mir-8350 precursor miRNA

Sequence

GGCGACUUGCCCGGAAUCAAACaugaucaugUGCUUCCGGAGCGAGUCGUCGAA
((((((((((((((((....((((....))))..)))))).))))))))))...

Structure

---          -      UCAA    g 
   GGCGACUUGC CCGGAA    ACau a
   |||||||||| ||||||    ||||  
   CUGCUGAGCG GGCCUU    Ugua u
AAG          A      --CG    c 

Annotation confidence Not enough data

Genome context

ABKE03000092.1: 2614091-2614144 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8350

Mature ppc-miR-8350-5p

• Accession: MIMAT0033252
• Description: Pristionchus pacificus ppc-miR-8350-5p mature miRNA
• Sequence: 1 - GGCGACUUGCCCGGAAUCAAAC - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8350-3p

• Accession: MIMAT0033253
• Description: Pristionchus pacificus ppc-miR-8350-3p mature miRNA
• Sequence: 32 - UGCUUCCGGAGCGAGUCGUCGAA - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260