Stem-loop ppc-mir-8349

Accession

MI0027055

Description

Pristionchus pacificus ppc-mir-8349 precursor miRNA

Sequence

UUUUGAUUGCACGAUAACGUCAgauagaugcugcugcgaauucugCUGCUAUCGAGCCAAUCAAAACC
((((((((((.(((((.((.((((....(((....)))...)))).)).))))).).)))))))))..

Structure

--         - A     A  U    uaga   u 
  UUUUGAUUG C CGAUA CG CAga    ugc g
  ||||||||| | ||||| || ||||    |||  
  AAAACUAAC G GCUAU GU gucu    gcg c
CC         C A     C  C    -uaa   u 

Annotation confidence Not enough data

Genome context

ABKE03000108.1: 80459-80526 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8349

Mature ppc-miR-8349-5p

• Accession: MIMAT0033246
• Description: Pristionchus pacificus ppc-miR-8349-5p mature miRNA
• Sequence: 1 - UUUUGAUUGCACGAUAACGUCA - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8349-3p

• Accession: MIMAT0033247
• Description: Pristionchus pacificus ppc-miR-8349-3p mature miRNA
• Sequence: 46 - CUGCUAUCGAGCCAAUCAAAACC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260