Stem-loop ppc-mir-8315-1

Accession

MI0027014

Description

Pristionchus pacificus ppc-mir-8315-1 precursor miRNA

Sequence

GUCCUCAAACAUUCUGGUAUUUCGCaaauugaaaagcgAUACCAGUCUGGAUGAGGCUGA
(.(((((..((..((((((..((((..........))))))))))..))..))))))...

Structure

--- U     AA  UU      UU    aaau 
   G CCUCA  CA  CUGGUA  UCGC    u
   | |||||  ||  ||||||  ||||     
   C GGAGU  GU  GACCAU  Agcg    g
AGU -     AG  CU      --    aaaa 

Annotation confidence Not enough data

Genome context

ABKE03000107.1: 3747283-3747342 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-8315-1

Mature ppc-miR-8315-5p

• Accession: MIMAT0033167
• Description: Pristionchus pacificus ppc-miR-8315-5p mature miRNA
• Sequence: 1 - GUCCUCAAACAUUCUGGUAUUUCGC - 25
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8315-3p

• Accession: MIMAT0033168
• Description: Pristionchus pacificus ppc-miR-8315-3p mature miRNA
• Sequence: 39 - AUACCAGUCUGGAUGAGGCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260