Stem-loop ppc-mir-8312

Accession

MI0027007

Description

Pristionchus pacificus ppc-mir-8312 precursor miRNA

Sequence

GAGUCGCGUUUCGCGAAUUUGauaucuggaaggggaauguguuucagcuagUCAUCCUUGCGUCGUUUAUCU
((...(((...(((((...((((..((((((.(......).))))))...))))...))))).)))...)).

Structure

-  GUC   UUU     AUU    -au      g gg 
 GA   GCG   CGCGA   UGau   cuggaa g  a
 ||   |||   |||||   ||||   |||||| |   
 CU   UGC   GCGUU   ACUg   gacuuu u  a
U  AUU   --U     CCU    auc      g gu 

Annotation confidence Not enough data

Genome context

ABKE03000063.1: 3369461-3369532 [-]

Mature ppc-miR-8312-5p

• Accession: MIMAT0033154
• Description: Pristionchus pacificus ppc-miR-8312-5p mature miRNA
• Sequence: 1 - GAGUCGCGUUUCGCGAAUUUG - 21
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8312-3p

• Accession: MIMAT0033155
• Description: Pristionchus pacificus ppc-miR-8312-3p mature miRNA
• Sequence: 52 - UCAUCCUUGCGUCGUUUAUCU - 72
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260