Stem-loop ppc-mir-84e

Accession

MI0026948

Description

Pristionchus pacificus ppc-mir-84e precursor miRNA

Literature search

1 open access papers mention ppc-mir-84e
(1 sentences)

Sequence

UGAGGUAGUUAAGAAUAGCACUgcuauucacgaagagcaagUGCAUUCUUAUCCUGUCUCAGC
((((((((.(((((((.((((((((..........))).))))))))))))..))))))))..

Structure

--        -U       A     -   auuc 
  UGAGGUAG  UAAGAAU GCACU gcu    a
  ||||||||  ||||||| ||||| |||     
  ACUCUGUC  AUUCUUA CGUga cga    c
CG        CU       -     a   gaag 

Annotation confidence Not enough data

Genome context

ABKE03000031.1: 402079-402141 [-]

Mature ppc-miR-84e-5p

• Accession: MIMAT0033039
• Description: Pristionchus pacificus ppc-miR-84e-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUAAGAAUAGCACU - 22
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-84e-3p

• Accession: MIMAT0033040
• Description: Pristionchus pacificus ppc-miR-84e-3p mature miRNA
• Sequence: 42 - UGCAUUCUUAUCCUGUCUCAGC - 63
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260