Stem-loop ppc-mir-2253c

Accession

MI0026928

Description

Pristionchus pacificus ppc-mir-2253c precursor miRNA

Sequence

CGGAGUUCCAACAGGCCAUACAacuuugcguuugCAUGGCACUGCUGAAACUCCGAA
(((((((.((.((((((((.(((........))).))))).))).)).)))))))..

Structure

--       C  A   -     A   cuu 
  CGGAGUU CA CAG GCCAU CAa   u
  ||||||| || ||| ||||| |||    
  GCCUCAA GU GUC CGGUA guu   g
AA       A  C   A     C   ugc 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 2892137-2892193 [+]

Mature ppc-miR-2253c-5p

• Accession: MIMAT0033001
• Description: Pristionchus pacificus ppc-miR-2253c-5p mature miRNA
• Sequence: 1 - CGGAGUUCCAACAGGCCAUACA - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2253c-3p

• Accession: MIMAT0033002
• Description: Pristionchus pacificus ppc-miR-2253c-3p mature miRNA
• Sequence: 35 - CAUGGCACUGCUGAAACUCCGAA - 57
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260