Stem-loop ppc-mir-2237d

Accession

MI0026926

Description

Pristionchus pacificus ppc-mir-2237d precursor miRNA

Sequence

UACCCGUAAAUUCUCGGACAGUUcguauauguaagcgcaCUGCCCAGAAUUUUCGGGUUCC
.(((((.(((((((.((.((((.(((........))).)))))).))))))).)))))...

Structure

--U     U       C  A    U   aua 
   ACCCG AAAUUCU GG CAGU cgu   u
   ||||| ||||||| || |||| |||    
   UGGGC UUUAAGA CC GUCa gcg   g
CCU     U       C  -    c   aau 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 401061-401121 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-2237d

Mature ppc-miR-2237d-5p

• Accession: MIMAT0032997
• Description: Pristionchus pacificus ppc-miR-2237d-5p mature miRNA
• Sequence: 1 - UACCCGUAAAUUCUCGGACAGUU - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2237d-3p

• Accession: MIMAT0032998
• Description: Pristionchus pacificus ppc-miR-2237d-3p mature miRNA
• Sequence: 40 - CUGCCCAGAAUUUUCGGGUUCC - 61
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260