Stem-loop ppc-mir-8253

Accession

MI0026914

Description

Pristionchus pacificus ppc-mir-8253 precursor miRNA

Sequence

UGUUGAAGACUGCAUCUCGAGCguagaaucaccuuUCGAAAUGUAUCUCUUCCACAUA
(((.(((((.(((((.(((((.((......))..))))).)))))..))))).)))..

Structure

--   U     -C     C     -C  ag 
  UGU GAAGA  UGCAU UCGAG  gu  a
  ||| |||||  ||||| |||||  ||   
  ACA CUUCU  AUGUA AGCUu  ca  a
AU   C     CU     A     uc  cu 

Annotation confidence Not enough data

Genome context

ABKE03000003.1: 125073-125130 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8253

Mature ppc-miR-8253-5p

• Accession: MIMAT0032974
• Description: Pristionchus pacificus ppc-miR-8253-5p mature miRNA
• Sequence: 1 - UGUUGAAGACUGCAUCUCGAGC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8253-3p

• Accession: MIMAT0032975
• Description: Pristionchus pacificus ppc-miR-8253-3p mature miRNA
• Sequence: 36 - UCGAAAUGUAUCUCUUCCACAUA - 58
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260