Stem-loop ppc-mir-2238j

Accession

MI0026910

Description

Pristionchus pacificus ppc-mir-2238j precursor miRNA

Sequence

UCGUCAGCUCCACAUGUCAAUCguugauucgagcacgAAUGACGAGUGCAGAUGGUGAGA
((((((.((.(((.(((((.((((..........)))).))))).))).)).))))))..

Structure

--      G  C   A     A    ugau 
  UCGUCA CU CAC UGUCA UCgu    u
  |||||| || ||| ||||| ||||     
  AGUGGU GA GUG GCAGU Agca    c
AG      A  C   A     A    cgag 

Annotation confidence Not enough data

Genome context

ABKE03000020.1: 188103-188162 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2238j

Mature ppc-miR-2238j-5p

• Accession: MIMAT0032966
• Description: Pristionchus pacificus ppc-miR-2238j-5p mature miRNA
• Sequence: 1 - UCGUCAGCUCCACAUGUCAAUC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2238j-3p

• Accession: MIMAT0032967
• Description: Pristionchus pacificus ppc-miR-2238j-3p mature miRNA
• Sequence: 38 - AAUGACGAGUGCAGAUGGUGAGA - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260