Stem-loop ppc-mir-2235d

Accession

MI0026903

Description

Pristionchus pacificus ppc-mir-2235d precursor miRNA

Sequence

CCACUUAAACCUGCCGGUUCGAACugugauaugaaguguUCACCGGGGGCCUUGAGUAGC
..((((((..((.(((((..((((.............))))))))).))..))))))...

Structure

-CC      AC  G     UC    uguga 
   ACUUAA  CU CCGGU  GAAC     u
   ||||||  || |||||  ||||     a
   UGAGUU  GG GGCCA  CUug     u
CGA      CC  G     --    ugaag 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 3623518-3623577 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-2235d

Mature ppc-miR-2235d-5p

• Accession: MIMAT0032952
• Description: Pristionchus pacificus ppc-miR-2235d-5p mature miRNA
• Sequence: 1 - CCACUUAAACCUGCCGGUUCGAAC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2235d-3p

• Accession: MIMAT0032953
• Description: Pristionchus pacificus ppc-miR-2235d-3p mature miRNA
• Sequence: 40 - UCACCGGGGGCCUUGAGUAGC - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260