Stem-loop ppc-mir-312b

Accession

MI0026899

Description

Pristionchus pacificus ppc-mir-312b precursor miRNA

Sequence

CACUAUCUCCUUGUCGUCAUGCGugauaugcaauucgUAUGGCACAUCGAGACGGAGAA
.....(((((.(.(((..(((.((.(((((.....))))).)).)))))).).))))).

Structure

CACUA     U G   UC   C  g     c 
     UCUCC U UCG  AUG Gu auaug a
     ||||| | |||  ||| || ||||| a
     AGAGG A AGC  UAC CG UAUgc u
----A     C G   --   A  G     u 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1955182-1955240 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-312b

Mature ppc-miR-312b-5p

• Accession: MIMAT0032944
• Description: Pristionchus pacificus ppc-miR-312b-5p mature miRNA
• Sequence: 1 - CACUAUCUCCUUGUCGUCAUGCG - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-312b-3p

• Accession: MIMAT0032945
• Description: Pristionchus pacificus ppc-miR-312b-3p mature miRNA
• Sequence: 38 - UAUGGCACAUCGAGACGGAGAA - 59
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260