Stem-loop ppc-mir-8242

Accession

MI0026898

Description

Pristionchus pacificus ppc-mir-8242 precursor miRNA

Sequence

ACUCCGUCCACUGCAUAUCAUUccugcagaaagggcaaUGAUAUUUAGUGGCACGGAGUGA
(((((((((((((.(((((((((((.......))).)))))))).)))))).)))))))..

Structure

--       -      C        -   gc 
  ACUCCGU CCACUG AUAUCAUU ccu  a
  ||||||| |||||| |||||||| |||  g
  UGAGGCA GGUGAU UAUAGUaa ggg  a
AG       C      U        c   aa 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1910714-1910774 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8242

Mature ppc-miR-8242-5p

• Accession: MIMAT0032942
• Description: Pristionchus pacificus ppc-miR-8242-5p mature miRNA
• Sequence: 1 - ACUCCGUCCACUGCAUAUCAUU - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8242-3p

• Accession: MIMAT0032943
• Description: Pristionchus pacificus ppc-miR-8242-3p mature miRNA
• Sequence: 39 - UGAUAUUUAGUGGCACGGAGUGA - 61
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260