Stem-loop ppc-mir-8240

Accession

MI0026895

Description

Pristionchus pacificus ppc-mir-8240 precursor miRNA

Sequence

UGUGGGAGCGUGUGGACAGUAUCgaucguauugcgcagagaUUUGUUCGCUUCGCUCGCACAGA
((((.(((((.((((((((.(((..((((...))).)..)))))))))))..))))).))))..

Structure

--    G     -U        U   ga -   a 
  UGUG GAGCG  GUGGACAG AUC  u cgu  
  |||| |||||  |||||||| |||  | ||| u
  ACAC CUCGC  CGCUUGUU Uag  a gcg  
AG    G     UU        -   ag c   u 

Annotation confidence Not enough data

Genome context

ABKE03000122.1: 2221371-2221434 [-]

Mature ppc-miR-8240-5p

• Accession: MIMAT0032936
• Description: Pristionchus pacificus ppc-miR-8240-5p mature miRNA
• Sequence: 1 - UGUGGGAGCGUGUGGACAGUAUC - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8240-3p

• Accession: MIMAT0032937
• Description: Pristionchus pacificus ppc-miR-8240-3p mature miRNA
• Sequence: 42 - UUUGUUCGCUUCGCUCGCACAGA - 64
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260