Stem-loop ppc-mir-8238

Accession

MI0026893

Description

Pristionchus pacificus ppc-mir-8238 precursor miRNA

Sequence

GUCCGUACAUCUGCAUGCCACAuuuuuaucuguauugUGGAAUGUAUACUGUAUCGACGA
(((.(((((..(((((.(((((.............))))).)))))...))))).)))..

Structure

--   C     -UC     G     uuuuu 
  GUC GUACA   UGCAU CCACA     a
  ||| |||||   ||||| |||||     u
  CAG UAUGU   AUGUA GGUgu     c
AG   C     CAU     A     uaugu 

Annotation confidence Not enough data

Genome context

ABKE03000131.1: 501523-501582 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8238

Mature ppc-miR-8238-5p

• Accession: MIMAT0032932
• Description: Pristionchus pacificus ppc-miR-8238-5p mature miRNA
• Sequence: 1 - GUCCGUACAUCUGCAUGCCACA - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8238-3p

• Accession: MIMAT0032933
• Description: Pristionchus pacificus ppc-miR-8238-3p mature miRNA
• Sequence: 38 - UGGAAUGUAUACUGUAUCGACGA - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260