Stem-loop ppc-mir-84d

Accession

MI0026887

Description

Pristionchus pacificus ppc-mir-84d precursor miRNA

Literature search

1 open access papers mention ppc-mir-84d
(1 sentences)

Sequence

AGAGGUAGUAUGUAAUACUGCAAugccccgaugggauucauuuGCAUAUUCACACUGCCUCCCC
.((((((((.((.((((.(((((((.(((...)))...)).))))))))))).))))))))...

Structure

--A        A  U    C     -  --c   g 
   GAGGUAGU UG AAUA UGCAA ug   ccc  
   |||||||| || |||| ||||| ||   ||| a
   CUCCGUCA AC UUAU ACGuu ac   ggg  
CCC        C  -    -     u  uua   u 

Annotation confidence Not enough data

Genome context

ABKE03000008.1: 1930896-1930959 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-84d

Mature ppc-miR-84d-5p

• Accession: MIMAT0032920
• Description: Pristionchus pacificus ppc-miR-84d-5p mature miRNA
• Sequence: 1 - AGAGGUAGUAUGUAAUACUGCAA - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-84d-3p

• Accession: MIMAT0032921
• Description: Pristionchus pacificus ppc-miR-84d-3p mature miRNA
• Sequence: 44 - GCAUAUUCACACUGCCUCCCC - 64
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260