Stem-loop ppc-mir-63j

Accession

MI0026885

Description

Pristionchus pacificus ppc-mir-63j precursor miRNA

Sequence

CCGCCCGCUUGCAGUUGUCAUGGUccucuuguugagagcaggccacUAUGACACUCAAGCGAGUGAAG
.(((.((((((.(((.((((((((((((((.....))).)))..))))))))))))))))).)))...

Structure

--C   C      C   U        --   -   g 
   CGC CGCUUG AGU GUCAUGGU  ccu cuu u
   ||| |||||| ||| ||||||||  ||| ||| u
   GUG GCGAAC UCA CAGUAUca  gga gag g
GAA   A      -   -        cc   c   a 

Annotation confidence Not enough data

Genome context

ABKE03000076.1: 1442729-1442796 [+]

Mature ppc-miR-63j-5p

• Accession: MIMAT0032916
• Description: Pristionchus pacificus ppc-miR-63j-5p mature miRNA
• Sequence: 1 - CCGCCCGCUUGCAGUUGUCAUGGU - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-63j-3p

• Accession: MIMAT0032917
• Description: Pristionchus pacificus ppc-miR-63j-3p mature miRNA
• Sequence: 47 - UAUGACACUCAAGCGAGUGAAG - 68
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260