Stem-loop ppc-mir-8226

Accession

MI0026875

Description

Pristionchus pacificus ppc-mir-8226 precursor miRNA

Sequence

AGGGCCGUUCCCCUGCUCAACCcccuuugcaucacaaacaauggUUGACAGCCGUACGACCCCCG
.(((.(((....(((.((((((...((((.....))))....)))))))))....))).)))...

Structure

--A   C   UCCC   C      -ccc    c 
   GGG CGU    CUG UCAACC    uuug a
   ||| |||    ||| ||||||    |||| u
   CCC GCA    GAC AGUUgg    aaac c
GCC   A   UGCC   -      uaac    a 

Annotation confidence Not enough data

Genome context

ABKE03000088.1: 115402-115466 [-]

Mature ppc-miR-8226-5p

• Accession: MIMAT0032896
• Description: Pristionchus pacificus ppc-miR-8226-5p mature miRNA
• Sequence: 1 - AGGGCCGUUCCCCUGCUCAACC - 22
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8226-3p

• Accession: MIMAT0032897
• Description: Pristionchus pacificus ppc-miR-8226-3p mature miRNA
• Sequence: 45 - UUGACAGCCGUACGACCCCCG - 65
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260