Stem-loop ppc-mir-42c

Accession

MI0026871

Description

Pristionchus pacificus ppc-mir-42c precursor miRNA

Sequence

40843 reads, 2062.0 reads per million, 12 experiments

gCCGUAGAUACCUCGUGUGAGCUguacauucaaucaauaugcUCACCGGGUGUUUCUGCGACCU
..((((((.((((((.((((((..................)))))))))).)).))))))....

Structure

--gC      U  -    U      Uguacauu 
    CGUAGA AC CUCG GUGAGC        c
    |||||| || |||| ||||||         
    GCGUCU UG GGGC CACUcg        a
UCCA      U  U    -      uauaacua 

Annotation confidence High

Genome context

ABKE03000092.1: 1773629-1773692 [-]

Mature ppc-miR-42c-5p

• Accession: MIMAT0032888
• Description: Pristionchus pacificus ppc-miR-42c-5p mature miRNA
• Sequence: 2 - CCGUAGAUACCUCGUGUGAGCU - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-42c-3p

• Accession: MIMAT0032889
• Description: Pristionchus pacificus ppc-miR-42c-3p mature miRNA
• Sequence: 43 - UCACCGGGUGUUUCUGCGACCU - 64
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260