Stem-loop ppc-mir-36

Accession

MI0026868

Description

Pristionchus pacificus ppc-mir-36 precursor miRNA

Sequence

CGUGGAUGGUUACUUCGGUGGAUAguucaauugcaagccuaUCACCGGGUAUACAUUCAUCGA
((((((((..((((.(((((.((((.............)))))))))))))..)))))).)).

Structure

-  -      GU    U     G    uucaa 
 CG UGGAUG  UACU CGGUG AUAg     u
 || ||||||  |||| ||||| ||||     u
 GC ACUUAC  AUGG GCCAC Uauc     g
A  U      AU    -     -    cgaac 

Annotation confidence Not enough data

Genome context

ABKE03000107.1: 3733289-3733351 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-36

Mature ppc-miR-36-5p

• Accession: MIMAT0032882
• Description: Pristionchus pacificus ppc-miR-36-5p mature miRNA
• Sequence: 1 - CGUGGAUGGUUACUUCGGUGGAUA - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-36-3p

• Accession: MIMAT0032883
• Description: Pristionchus pacificus ppc-miR-36-3p mature miRNA
• Sequence: 42 - UCACCGGGUAUACAUUCAUCGA - 63
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260