Stem-loop ppc-mir-8215b

Accession

MI0026867

Description

Pristionchus pacificus ppc-mir-8215b precursor miRNA

Sequence

AUCCGCAGCGAUCUGUGACCAUCacgauuugaugugaUGUGCACGAUUGUCUACGGGUGA
(((((.(((((((.(((..((((((........))))))..)))))))).)).)))))..

Structure

--     C  -     U   AC      gau 
  AUCCG AG CGAUC GUG  CAUCac   u
  ||||| || ||||| |||  ||||||    
  UGGGC UC GUUAG CAC  GUagug   u
AG     A  U     -   GU      uag 

Annotation confidence Not enough data

Genome context

ABKE03000012.1: 5532666-5532725 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8215b

Mature ppc-miR-8215b-5p

• Accession: MIMAT0032880
• Description: Pristionchus pacificus ppc-miR-8215b-5p mature miRNA
• Sequence: 1 - AUCCGCAGCGAUCUGUGACCAUC - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8215b-3p

• Accession: MIMAT0032881
• Description: Pristionchus pacificus ppc-miR-8215b-3p mature miRNA
• Sequence: 38 - UGUGCACGAUUGUCUACGGGUGA - 60
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260