Stem-loop ppc-mir-2a

Accession

MI0026863

Description

Pristionchus pacificus ppc-mir-2a precursor miRNA

Literature search

1 open access papers mention ppc-mir-2a
(4 sentences)

Sequence

CGUCAAAGCGGUGGGUGAUUUAUCcacgucuauugaugaucugaUAUCACAGCGCUUGCUUUGACAUG
.((((((((((((.(((((.......((((....)))).......)))))..))).)))))))))...

Structure

--C         -   -G     UUAUCca    u 
   GUCAAAGCG GUG  GUGAU       cguc a
   ||||||||| |||  |||||       ||||  
   CAGUUUCGU CGC  CACUA       guag u
GUA         U   GA     Uagucua    u 

Annotation confidence Not enough data

Genome context

ABKE03000043.1: 281083-281150 [-]

Mature ppc-miR-2a-5p

• Accession: MIMAT0032872
• Description: Pristionchus pacificus ppc-miR-2a-5p mature miRNA
• Sequence: 1 - CGUCAAAGCGGUGGGUGAUUUAUC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2a-3p

• Accession: MIMAT0032873
• Description: Pristionchus pacificus ppc-miR-2a-3p mature miRNA
• Sequence: 45 - UAUCACAGCGCUUGCUUUGACAUG - 68
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260