Stem-loop ppc-mir-8219

Accession

MI0026862

Description

Pristionchus pacificus ppc-mir-8219 precursor miRNA

Sequence

ACCGCUGCCCUGGCCUUGCGUCACUcucccucucucccuugcagUGGCAAGAACUCGGCACGGUCC
((((.((((..(..(((((..(((((..............).)))))))))..)..))))))))..

Structure

--    C    CU GC     GU    - ucccuc 
  ACCG UGCC  G  CUUGC  CACU c      u
  |||| ||||  |  |||||  |||| |       
  UGGC ACGG  C  GAACG  GUga g      c
CC    -    CU AA     --    c uucccu 

Annotation confidence Not enough data

Genome context

ABKE03000031.1: 560126-560191 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8219

Mature ppc-miR-8219-5p

• Accession: MIMAT0032870
• Description: Pristionchus pacificus ppc-miR-8219-5p mature miRNA
• Sequence: 1 - ACCGCUGCCCUGGCCUUGCGUCACU - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8219-3p

• Accession: MIMAT0032871
• Description: Pristionchus pacificus ppc-miR-8219-3p mature miRNA
• Sequence: 45 - UGGCAAGAACUCGGCACGGUCC - 66
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260