Stem-loop ppc-mir-8215a

Accession

MI0026857

Description

Pristionchus pacificus ppc-mir-8215a precursor miRNA

Sequence

AUCCUCAGUGAUACGUGAACAUCacgauuugaugugaUGCACUAUUCUCUGAGGCUGU
..((((((.((...(((..((((((........)))))))))...)).))))))....

Structure

--AU      U  UAC   AA      gau 
    CCUCAG GA   GUG  CAUCac   u
    |||||| ||   |||  ||||||    
    GGAGUC CU   CAC  GUagug   u
UGUC      U  UAU   --      uag 

Annotation confidence Not enough data

Genome context

ABKE03000012.1: 5532858-5532915 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8215a

Mature ppc-miR-8215a-5p

• Accession: MIMAT0032860
• Description: Pristionchus pacificus ppc-miR-8215a-5p mature miRNA
• Sequence: 1 - AUCCUCAGUGAUACGUGAACAUC - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-8215a-3p

• Accession: MIMAT0032861
• Description: Pristionchus pacificus ppc-miR-8215a-3p mature miRNA
• Sequence: 38 - UGCACUAUUCUCUGAGGCUGU - 58
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260