Stem-loop ppc-mir-2235b

Accession

MI0026852

Description

Pristionchus pacificus ppc-mir-2235b precursor miRNA

Sequence

CCAUCCAAUUCUGUCCGGUCUGAACcauaguggauuguguUCACCGGGAGCAUUGUUUGAUC
.((..((((.((.((((((..((((((........)).)))))))))))).))))..))...

Structure

--C  UC    U  G      CU    -  uag 
   CA  CAAU CU UCCGGU  GAAC ca   u
   ||  |||| || ||||||  |||| ||    
   GU  GUUA GA GGGCCA  CUug gu   g
CUA  UU    C  -      --    u  uag 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 3623734-3623795 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-2235b

Mature ppc-miR-2235b-5p

• Accession: MIMAT0032850
• Description: Pristionchus pacificus ppc-miR-2235b-5p mature miRNA
• Sequence: 1 - CCAUCCAAUUCUGUCCGGUCUGAAC - 25
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2235b-3p

• Accession: MIMAT0032851
• Description: Pristionchus pacificus ppc-miR-2235b-3p mature miRNA
• Sequence: 41 - UCACCGGGAGCAUUGUUUGAUC - 62
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260