Stem-loop ppc-mir-2251b

Accession

MI0026851

Description

Pristionchus pacificus ppc-mir-2251b precursor miRNA

Sequence

AUCUCCAUAAAUCCCGGUUUUAUCacgaauugaagugaUAACUGGGAUUCUGUGGAGAUCU
((((((((((((((((((..((((((........))))))))))))))).)))))))))..

Structure

--         -         UU      gaa 
  AUCUCCAUA AAUCCCGGU  UAUCac   u
  ||||||||| |||||||||  ||||||    
  UAGAGGUGU UUAGGGUCA  AUagug   u
UC         C         --      aag 

Annotation confidence Not enough data

Genome context

ABKE03000093.1: 9033408-9033468 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2251b

Mature ppc-miR-2251b-5p

• Accession: MIMAT0032848
• Description: Pristionchus pacificus ppc-miR-2251b-5p mature miRNA
• Sequence: 1 - AUCUCCAUAAAUCCCGGUUUUAUC - 24
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2251b-3p

• Accession: MIMAT0032849
• Description: Pristionchus pacificus ppc-miR-2251b-3p mature miRNA
• Sequence: 39 - UAACUGGGAUUCUGUGGAGAUCU - 61
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260