Stem-loop ssa-mir-99-1

Accession

MI0026767

Description

Salmo salar ssa-mir-99-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-99-1
(4 sentences)

Sequence

AACCCGUAGAUCCGAUCUUGUGgcaaaucugacaucaCAAGCUCCUCUCUGUGGGUCU
.(((((((((...((.(((((((...........))))))).))...)))))))))..

Structure

-A         UCC  U       caaa 
  ACCCGUAGA   GA CUUGUGg    u
  |||||||||   || |||||||    c
  UGGGUGUCU   CU GAACacu    u
UC         CUC  C       acag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-99-5p

• Accession: MIMAT0032718
• Description: Salmo salar ssa-miR-99-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-99-3p

• Accession: MIMAT0032719
• Description: Salmo salar ssa-miR-99-3p mature miRNA
• Sequence: 38 - CAAGCUCCUCUCUGUGGGUCU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482