Stem-loop ssa-mir-222a-1

Accession

MI0026630

Description

Salmo salar ssa-mir-222a-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-222a-1
(4 sentences)

Sequence

UGCUCAGUAGGCAGUGUAGAUCCUguauaaugaucagcAGCUACAUCUGGCUACUGGGUCUC
.(((((((((.((((((((...(((.........)))...))))).))).)))))))))...

Structure

--U         G   -     AUC   uau 
   GCUCAGUAG CAG UGUAG   CUg   a
   ||||||||| ||| |||||   |||   a
   UGGGUCAUC GUC ACAUC   gac   u
CUC         G   U     GAc   uag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-222a-5p

• Accession: MIMAT0032540
• Description: Salmo salar ssa-miR-222a-5p mature miRNA
• Sequence: 1 - UGCUCAGUAGGCAGUGUAGAUCCU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-222a-3p

• Accession: MIMAT0032541
• Description: Salmo salar ssa-miR-222a-3p mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482