Stem-loop ssa-mir-221

Accession

MI0026629

Description

Salmo salar ssa-mir-221 precursor miRNA

Literature search

2 open access papers mention ssa-mir-221
(8 sentences)

Sequence

ACCUAGCAUACAAUGUAGAUUUCugugugguuuaaacuacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((((.......)).))))))))))))).))))))))..

Structure

--        U         AUUU    -  gg 
  ACCUAGCA ACAAUGUAG    Cugu gu  u
  |||||||| |||||||||    |||| ||  u
  UGGGUCGU UGUUACAUC    GAca ca  u
UU        C         ----    u  aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-221-3p

• Accession: MIMAT0032538
• Description: Salmo salar ssa-miR-221-3p mature miRNA
• Sequence: 1 - ACCUAGCAUACAAUGUAGAUUUC - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-221-5p

• Accession: MIMAT0032539
• Description: Salmo salar ssa-miR-221-5p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482