Stem-loop ssa-mir-200a-3

Accession

MI0026583

Description

Salmo salar ssa-mir-200a-3 precursor miRNA

Sequence

CAUCUUACGAGGUAGUUUUGGAuguuauaacucccucUAAUACUGCCUGGUAAUGAUGAU
((((((((.(((((((.(((((.............))))).))))))).)))).))))..

Structure

--    -    G       U     uguua 
  CAUC UUAC AGGUAGU UUGGA     u
  |||| |||| ||||||| |||||     a
  GUAG AAUG UCCGUCA AAUcu     a
UA    U    G       U     cccuc 

Annotation confidence Low

Genome context

Unknown

Mature ssa-miR-200a-3p

• Accession: MIMAT0032476
• Description: Salmo salar ssa-miR-200a-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-200a-3-5p

• Accession: MIMAT0032478
• Description: Salmo salar ssa-miR-200a-3-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGUAGUUUUGGA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482