Stem-loop ssa-mir-181a-3

Accession

MI0026538

Description

Salmo salar ssa-mir-181a-3 precursor miRNA

Literature search

4 open access papers mention ssa-mir-181a-3
(15 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGUuugagccucugacagaaacCAUCGACGGUUGGCUGUACC
.(((.(((..((((((((((.((((.............))))))))))))))))).)))...

Structure

--A   U   AC          A    gagcc 
   ACA UCA  GCUGUCGGUG GUuu     u
   ||| |||  |||||||||| ||||     c
   UGU GGU  UGGCAGCUAC caaa     u
CCA   C   --          -    gacag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-181a-5p

• Accession: MIMAT0032417
• Description: Salmo salar ssa-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181a-3-3p

• Accession: MIMAT0032420
• Description: Salmo salar ssa-miR-181a-3-3p mature miRNA
• Sequence: 43 - CAUCGACGGUUGGCUGUACC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482