Stem-loop ssa-mir-16a-2

Accession

MI0026529

Description

Salmo salar ssa-mir-16a-2 precursor miRNA

Literature search

1 open access papers mention ssa-mir-16a-2
(1 sentences)

Sequence

UAGCAGCACGUAAAUAUUGGAGuucaccacugcugaagccUCCAGUAUUGACGGUGCUGUUGA
(((((((((((.((((((((((((((.......))))..)))))))))).)).))))))))).

Structure

-         -  A          --    cc 
 UAGCAGCAC GU AAUAUUGGAG  uuca  a
 ||||||||| || ||||||||||  ||||  c
 GUUGUCGUG CA UUAUGACCUc  aagu  u
A         G  G          cg    cg 

Annotation confidence Low

Genome context

Unknown

Mature ssa-miR-16a-5p

• Accession: MIMAT0032405
• Description: Salmo salar ssa-miR-16a-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGAG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-16a-2-3p

• Accession: MIMAT0032407
• Description: Salmo salar ssa-miR-16a-2-3p mature miRNA
• Sequence: 41 - UCCAGUAUUGACGGUGCUGUUGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482