Stem-loop ssa-mir-101a-1

Accession

MI0026433

Description

Salmo salar ssa-mir-101a-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-101a-1
(6 sentences)

Sequence

UCAGUUAUCACUGUGCUGAUGCUguccaucuuaaaggUACAGUACUGUGAUAACUGAAG
(((((((((((.((((((.((((............)))))))))).)))))))))))..

Structure

--           U      A    gucca 
  UCAGUUAUCAC GUGCUG UGCU     u
  ||||||||||| |||||| ||||      
  AGUCAAUAGUG CAUGAC AUgg     c
GA           U      -    aaauu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-101a-5p

• Accession: MIMAT0032280
• Description: Salmo salar ssa-miR-101a-5p mature miRNA
• Sequence: 1 - UCAGUUAUCACUGUGCUGAUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-101a-3p

• Accession: MIMAT0032281
• Description: Salmo salar ssa-miR-101a-3p mature miRNA
• Sequence: 38 - UACAGUACUGUGAUAACUGAAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482