Stem-loop lus-MIR398f

Accession

MI0026413

Description

Linum usitatissimum lus-MIR398f precursor miRNA

Literature search

3 open access papers mention lus-MIR398f
(14 sentences)

Sequence

48954 reads, 8637.0 reads per million, 24 experiments

ccGGGUCGACUAGAGAACACACGaagagaaguccgcaacgaguggggcgcuucguuucacuuuccugGGUGUUCUCAGGUCGCCCCUG
..(((.(((((.((((((((..((((.(((((((.((.....)).)).))))).)))).((.....)))))))))).))))).)))..

Structure

cc   U     A        --------AC    a     -  g  a 
  GGG CGACU GAGAACAC          Gaag gaagu cc ca c
  ||| ||||| ||||||||          |||| ||||| || || g
  CCC GCUGG CUCUUGUG          cuuu cuucg gg gu a
GU   C     A        Gguccuuuca    g     c  g  g 

Annotation confidence High

Genome context

Unknown

Mature lus-miR398f-5p

• Accession: MIMAT0058459
• Description: Linum usitatissimum lus-miR398f-5p mature miRNA
• Sequence: 3 - GGGUCGACUAGAGAACACACG - 23
• Evidence: experimental ; unknown

Mature lus-miR398f-3p

• Accession: MIMAT0031861
• Description: Linum usitatissimum lus-miR398f-3p mature miRNA
• Sequence: 68 - GGUGUUCUCAGGUCGCCCCUG - 88
• Evidence: not_experimental

References

1. PubMed ID: 22841625
   Identification and characterization of miRNAs and their potential targets in flax
   "Neutelings G, Fenart S, Lucau-Danila A, Hawkins S"
   "J Plant Physiol (2012) 169:1754-1766