Stem-loop lus-MIR398e

Accession

MI0026412

Description

Linum usitatissimum lus-MIR398e precursor miRNA

Literature search

3 open access papers mention lus-MIR398e
(14 sentences)

Sequence

4040 reads, 775.0 reads per million, 24 experiments

gaGGGGUGCAACCUGAAAACACAGAcgacggauuuuggucguuugguucaaguuaacuacacuuaugucgucucUGUGUUCUCAGGUCACCCCUC
((((((((..((((((.((((((((.(((((.....(((.((..((((......)))))))))....))))))))))))).))))))))))))))

Structure

        CA      A        c     auuuu   c  uu    ca 
gaGGGGUG  ACCUGA AACACAGA gacgg     ggu gu  gguu  a
||||||||  |||||| |||||||| |||||     ||| ||  ||||   
CUCCCCAC  UGGACU UUGUGUcu cugcu     uca ca  ucaa  g
        --      C        -     -guau   -  --    uu 

Annotation confidence High

Genome context

Unknown

Mature lus-miR398e-5p

• Accession: MIMAT0058458
• Description: Linum usitatissimum lus-miR398e-5p mature miRNA
• Sequence: 3 - GGGGUGCAACCUGAAAACACAGA - 25
• Evidence: experimental ; unknown

Mature lus-miR398e-3p

• Accession: MIMAT0031860
• Description: Linum usitatissimum lus-miR398e-3p mature miRNA
• Sequence: 75 - UGUGUUCUCAGGUCACCCCUC - 95
• Evidence: not_experimental

References

1. PubMed ID: 22841625
   Identification and characterization of miRNAs and their potential targets in flax
   "Neutelings G, Fenart S, Lucau-Danila A, Hawkins S"
   "J Plant Physiol (2012) 169:1754-1766