Stem-loop lus-MIR398d

Accession

MI0026411

Description

Linum usitatissimum lus-MIR398d precursor miRNA

Literature search

3 open access papers mention lus-MIR398d
(14 sentences)

Sequence

3844 reads, 723.0 reads per million, 24 experiments

aaGGGGUGUAAUCUGAAAACACAGAcgacgaguaaucaguuggagucuugcuauauuuacucaugucucUGUGUUCUCAGGUCACCCCUC
.(((((((..((((((.((((((((.(((((((((..(((.((...)).)))....))))))..))))))))))).))))))))))))).

Structure

a       UA      A        c   --      --uc   u  a 
 aGGGGUG  AUCUGA AACACAGA gac  gaguaa    agu gg  
 |||||||  |||||| |||||||| |||  ||||||    ||| || g
 UCCCCAC  UGGACU UUGUGUcu cug  cucauu    ucg uc  
C       --      C        -   ua      uaua   u  u 

Annotation confidence High

Genome context

Unknown

Mature lus-miR398d-5p

• Accession: MIMAT0058457
• Description: Linum usitatissimum lus-miR398d-5p mature miRNA
• Sequence: 3 - GGGGUGUAAUCUGAAAACACAGA - 25
• Evidence: experimental ; unknown

Mature lus-miR398d-3p

• Accession: MIMAT0031859
• Description: Linum usitatissimum lus-miR398d-3p mature miRNA
• Sequence: 70 - UGUGUUCUCAGGUCACCCCUC - 90
• Evidence: not_experimental

References

1. PubMed ID: 22841625
   Identification and characterization of miRNAs and their potential targets in flax
   "Neutelings G, Fenart S, Lucau-Danila A, Hawkins S"
   "J Plant Physiol (2012) 169:1754-1766