Stem-loop lus-MIR396e

Accession

MI0026410

Description

Linum usitatissimum lus-MIR396e precursor miRNA

Literature search

3 open access papers mention lus-MIR396e
(4 sentences)

Sequence

605607 reads, 87539.0 reads per million, 24 experiments

UUCCACAGCUUUCUUGAACUUuccuaucuauacucgauuagcccuuuuuccacccucaauugcggcuuauuaauauauauaaauggagcauuuccaugggagaGCUCAAGAAAGCUGUGGGA
(((((((((((((((((.(((((((((..((.(((.((((((((.................).))))..............))).))).))....))))))))).)))))))))))))))))

Structure

                 A         --cu  a   g   --------------    - uuuuucc 
UUCCACAGCUUUCUUGA CUUuccuau    au cuc auu              agcc c       a
||||||||||||||||| |||||||||    || ||| |||              |||| |       c
AGGGUGUCGAAAGAACU Gagagggua    ua gag uaa              ucgg g       c
                 C         ccuu  c   g   auauauauaauuau    c uuaacuc 

Annotation confidence High

Genome context

Unknown

Mature lus-miR396e-5p

• Accession: MIMAT0031858
• Description: Linum usitatissimum lus-miR396e-5p mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACUU - 21
• Evidence: not_experimental

Mature lus-miR396e-3p

• Accession: MIMAT0058456
• Description: Linum usitatissimum lus-miR396e-3p mature miRNA
• Sequence: 104 - GCUCAAGAAAGCUGUGGGA - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 22841625
   Identification and characterization of miRNAs and their potential targets in flax
   "Neutelings G, Fenart S, Lucau-Danila A, Hawkins S"
   "J Plant Physiol (2012) 169:1754-1766