Stem-loop lus-MIR166j

Accession

MI0026407

Description

Linum usitatissimum lus-MIR166j precursor miRNA

Literature search

2 open access papers mention lus-MIR166j
(5 sentences)

Sequence

1335123 reads, 236925.0 reads per million, 24 experiments

aggGGAAUGUUGUCUGGCCCGAAGccucuauugacaauggccgaagaucaaauucgggagauggguuuagcgacuUCGGACCAGGCUUCAUUCCCC
.((((((((..((((((.((((((.(.(((....((....(((((.......)))))....))....))).).)))))).))))))..))))))))

Structure

a        UU      C      c u   uuga  augg     ga 
 ggGGAAUG  GUCUGG CCGAAG c cua    ca    ccgaa  u
 ||||||||  |||||| |||||| | |||    ||    |||||  c
 CCCCUUAC  CGGACC GGCUuc g gau    gu    ggcuu  a
-        UU      A      a c   uugg  agag     aa 

Annotation confidence High

Genome context

Unknown

Mature lus-miR166j-5p

• Accession: MIMAT0058454
• Description: Linum usitatissimum lus-miR166j-5p mature miRNA
• Sequence: 4 - GGAAUGUUGUCUGGCCCGAAG - 24
• Evidence: experimental ; unknown

Mature lus-miR166j-3p

• Accession: MIMAT0031855
• Description: Linum usitatissimum lus-miR166j-3p mature miRNA
• Sequence: 76 - UCGGACCAGGCUUCAUUCCCC - 96
• Evidence: not_experimental

References

1. PubMed ID: 22841625
   Identification and characterization of miRNAs and their potential targets in flax
   "Neutelings G, Fenart S, Lucau-Danila A, Hawkins S"
   "J Plant Physiol (2012) 169:1754-1766