Stem-loop cpa-MIR408

Accession

MI0026375

Description

Carica papaya cpa-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

2 open access papers mention cpa-MIR408
(9 sentences)

Sequence

ugggaagaggcagagcauggauggagucauuaacaauauacccuucuguuuuugguucuacccCUGCACUGCCUCUUCCCUGGC
.((((((((((((.(((.((.((((((((..((((...........))))..)))))))).)).))).))))))))))))....

Structure

---u            a   u  a        uu    auau 
    gggaagaggcag gca gg uggaguca  aaca    a
    |||||||||||| ||| || ||||||||  ||||    c
    CCCUUCUCCGUC CGU cc aucuuggu  uugu    c
CGGU            A   C  c        uu    cuuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR408

• Accession: MIMAT0031823
• Description: Carica papaya cpa-miR408 mature miRNA
• Sequence: 64 - CUGCACUGCCUCUUCCCUGGC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682