Stem-loop bma-mir-5365b

Accession

MI0026312

Description

Brugia malayi bma-mir-5365b precursor miRNA

Literature search

1 open access papers mention bma-mir-5365b
(1 sentences)

Sequence

uauuacaauuuuuucguuugucuucucuuaaucguauaagugugggugaUGAUUAAGAGAACACAAUCGAAUuugcuguaau
.((((((.....((((.((((.(((((((((((((((........)).))))))))))))).)))).)))).....))))))

Structure

u      auuuu    u    c             -  aag 
 auuaca     uucg uugu uucucuuaaucgu au   u
 ||||||     |||| |||| ||||||||||||| ||    
 uaaugu     AAGC AACA AAGAGAAUUAGUa ug   g
-      cguuU    U    C             g  ggu 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold33: 146574-146655 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5365b

Mature bma-miR-5365b

• Accession: MIMAT0031757
• Description: Brugia malayi bma-miR-5365b mature miRNA
• Sequence: 50 - UGAUUAAGAGAACACAAUCGAAU - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498