Stem-loop bma-mir-5363

Accession

MI0026309

Description

Brugia malayi bma-mir-5363 precursor miRNA

Sequence

uuuccacauaagccaugcguugAUGGGCAACGUUUCAAACCGUGUugcccgucugaaguuaaACGGUUUGAAUGUUGUCCAACAuugcuacgcuuuaucucuuucuc
.........((((...(((.((.(((((((((((.((((((((...((.........))...))))))))))))))))))).)).)))...))))............

Structure

---uuuccacau    cau   u  A           U        GUu  ccg 
            aagc   gcg ug UGGGCAACGUU CAAACCGU   gc   u
            ||||   ||| || ||||||||||| ||||||||   ||   c
            uucg   cgu AC ACCUGUUGUAA GUUUGGCA   ug   u
cucuuucucuau    cau   u  A           -        aau  aag 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold2: 1202001-1202107 [-]

Mature bma-miR-5363-5p

• Accession: MIMAT0031754
• Description: Brugia malayi bma-miR-5363-5p mature miRNA
• Sequence: 23 - AUGGGCAACGUUUCAAACCGUGU - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5363-3p

• Accession: MIMAT0037485
• Description: Brugia malayi bma-miR-5363-3p mature miRNA
• Sequence: 63 - ACGGUUUGAAUGUUGUCCAACA - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498