Stem-loop bma-mir-5360

Accession

MI0026307

Description

Brugia malayi bma-mir-5360 precursor miRNA

Sequence

ugaccaaagaACGAAUCGUCGAAUCGGAUGUCUGaguuaauuagucagagaaauucgaaucgacauucgaccuguggucac
((((((.((..(((((.(((((.((((((.(((((.(.....).)))))...)))))).))))))))))..)).)))))).

Structure

-      a  aA     C     A      --G     g u 
 ugacca ag  CGAAU GUCGA UCGGAU   UCUGa u a
 |||||| ||  ||||| ||||| ||||||   ||||| | a
 acuggu uc  gcuua cagcu agcuua   agacu a u
c      g  ca     -     a      aag     g u 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold99: 105564-105644 [-]

Mature bma-miR-5360

• Accession: MIMAT0031752
• Description: Brugia malayi bma-miR-5360 mature miRNA
• Sequence: 11 - ACGAAUCGUCGAAUCGGAUGUCUG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498