Stem-loop bma-mir-239

Accession

MI0026291

Description

Brugia malayi bma-mir-239 precursor miRNA

Sequence

cauagcuaggcccuuugugaagcUUUGUACUUCGGCUAAGGUGCUGcuacgguuacgggacaACACCUUGGCUAGGUACAAUGCucaacauaucggcuaccuucccu
........((((...(((..(((.((((((((.((((((((((.((((.((....)))).)).)))))))))))))))))).)))..)))....)))).........

Structure

-cauagcua    -cuu   ga   U        C          C  -  a  g 
         ggcc    ugu  agc UUGUACUU GGCUAAGGUG UG cu cg u
         ||||    |||  ||| |||||||| |||||||||| || || ||  
         ucgg    aca  uCG AACAUGGA UCGGUUCCAC ac gg gc u
ucccuucca    cuau   ac   U        -          A  a  -  a 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3: 623437-623543 [-]

Mature bma-miR-239-5p

• Accession: MIMAT0031742
• Description: Brugia malayi bma-miR-239-5p mature miRNA
• Sequence: 24 - UUUGUACUUCGGCUAAGGUGCUG - 46
• Evidence: experimental ; Illumina [2]

Mature bma-miR-239-3p

• Accession: MIMAT0037484
• Description: Brugia malayi bma-miR-239-3p mature miRNA
• Sequence: 63 - ACACCUUGGCUAGGUACAAUGC - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498