Stem-loop bbe-mir-34c

Accession

MI0026238

Description

Branchiostoma belcheri bbe-mir-34c precursor miRNA

Literature search

1 open access papers mention bbe-mir-34c
(1 sentences)

Sequence

253 reads, 85.0 reads per million, 16 experiments

auaucgugcagccaucUGGCAGUGUUAUUAGCUGGCCgcuaggagucgcucuugugGCCAUCUAUUAACGCUGCCCUAcggaagcgcgacac
...((((((..((....((((((((((.(((.(((((((.(((((...)))))))))))).))).))))))))))....))..))))))...

Structure

aua      ag  aucU          U   C       u     u 
   ucgugc  cc    GGCAGUGUUA UAG UGGCCgc aggag  
   ||||||  ||    |||||||||| ||| ||||||| ||||| c
   agcgcg  gg    CCGUCGCAAU AUC ACCGgug uucuc  
cac      aa  cAUC          U   U       -     g 

Annotation confidence Medium

Genome context

Unknown

Mature bbe-miR-34c-5p

• Accession: MIMAT0031673
• Description: Branchiostoma belcheri bbe-miR-34c-5p mature miRNA
• Sequence: 17 - UGGCAGUGUUAUUAGCUGGCC - 37
• Evidence: not_experimental

Mature bbe-miR-34c-3p

• Accession: MIMAT0058584
• Description: Branchiostoma belcheri bbe-miR-34c-3p mature miRNA
• Sequence: 57 - GCCAUCUAUUAACGCUGCCCUA - 78
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500