miRBase entry: ppe-MIR5225

Stem-loop ppe-MIR5225


Accession
MI0026159
Description
Prunus persica ppe-MIR5225 precursor miRNA


Sequence

aucaaauucguaggggcuUCUGUCGUAGGAGAGAUGGCGCcaaaugcaaucauauugguuugguacuaauuaugguagaauuaaagcuaagccaauuugggcaccggguuUCAUCUCUCCUCGACUGAAgccccucacuuugau
((((((...(((((((((((.((((.(((((((((((.(((...(((..(((.(((((((((((..(((((.......)))))..))))))))))).))))))...))).))))))))))))))).))))))))).))))))))

Structure
      uuc  -         U    U           C   aaa   aa   u           ac     au 
aucaaa   gu aggggcuUC GUCG AGGAGAGAUGG GCc   ugc  uca auugguuuggu  uaauu  g
||||||   || ||||||||| |||| ||||||||||| |||   |||  ||| |||||||||||  |||||  g
uaguuu   ca uccccgAAG CAGC UCCUCUCUACU ugg   acg  ggu uaaccgaaucg  auuaa  u
      ---  c         U    -           u   gcc   --   u           aa     ga 


Annotation confidence Not enough data
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Genome context
chrG3: 25326751-25326894 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR5225
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR5225-5p

Accession MIMAT0031548
Description Prunus persica ppe-miR5225-5p mature miRNA
Sequence 19 - UCUGUCGUAGGAGAGAUGGCGC - 40
Evidence experimental
Illumina [1]

Mature ppe-miR5225-3p

Accession MIMAT0031549
Description Prunus persica ppe-miR5225-3p mature miRNA
Sequence 111 - UCAUCUCUCCUCGACUGAA - 129
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149