miRBase entry: ppe-MIR399m

Stem-loop ppe-MIR399m


Accession
MI0026133
Description
Prunus persica ppe-MIR399m precursor miRNA

Literature search
4 open access papers mention ppe-MIR399m
(5 sentences)

Sequence

cagggcaaagucuccucuggcauguggccacuuauaauuauaaaugcuucgggcugagccucagugagcaaacccuugcauuauucuuguagugugcuuuaUGCCAAAGGAGAUUUGCUCGG
..(((((((.((((((.(((((((.(((((((.((((..((((.(((...(((.(..(((.....).))..))))..)))))))..)))))))).))).))))))).)))))))))))))..

Structure
ca       g      c       u   -    u    uu    a   uuc   c ga  - u 
  gggcaaa ucuccu uggcaug ggc cacu auaa  auaa ugc   ggg u  gc c c
  ||||||| |||||| ||||||| ||| |||| ||||  |||| |||   ||| |  || | a
  CUCGUUU AGAGGA ACCGUau ucg guga uguu  uauu acg   ccc a  cg g g
GG       -      A       u   u    -    cu    -   -uu   - aa  a u 


Annotation confidence Not enough data
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Genome context
chrG4: 3193035-3193156 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR399m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR399m

Accession MIMAT0031509
Description Prunus persica ppe-miR399m mature miRNA
Sequence 102 - UGCCAAAGGAGAUUUGCUCGG - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149